CESSHIV-1 database

General information on HIV-1 isolate

# 974

Accession number	DQ230841
Name	TW_D3
Subtype	CRF07_BC
Country	Taiwan
Sampling year	2004
Patient	D3

DQ230841 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aattatattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286226(#99) AF286230(#103) AX149647(#1550) AX149672(#1594) AX149771(#1595) AX149898(#1596)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy