CESSHIV-1 database

General information on HIV-1 isolate

# 1225

Accession number	DQ275647
Name	02ZAPS008MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-008M

DQ275647 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc ctttt-atttg actagcggag gctagaagga gagg

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy