CESSHIV-1 database

General information on HIV-1 isolate

# 1226

Accession number	DQ275648
Name	02ZAPS001MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-001M

DQ275648 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcag gaggcgagag -cggcggctgg tgagtacgcc aaaattttat ttgactagcg gaggctagga ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy