CESSHIV-1 database

General information on HIV-1 isolate

# 1228

Accession number	DQ275650
Name	04ZAPS194MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	194MB

DQ275650 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076867(#1569)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy