CESSHIV-1 database

General information on HIV-1 isolate

# 1231

Accession number	DQ275653
Name	03ZAPS020MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	PS-020M

DQ275653 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy