CESSHIV-1 database

General information on HIV-1 isolate

# 1232

Accession number	DQ275654
Name	03ZAPS086MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	086MB

DQ275654 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagta cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy