CESSHIV-1 database

General information on HIV-1 isolate

# 1234

Accession number	DQ275656
Name	03ZAPS103MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	103MB

DQ275656 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg g-ggcggctgg tgagtacgcc aaaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy