CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 627
Accession number DQ351228
Name 03ZAPS074MB2
SubtypeC
CountrySouth Africa
Sampling year 2003
Patient074MB

DQ351228 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaaattttat ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

AF443088(#186) AF443096(#194) AF443099(#197)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy