CESSHIV-1 database

General information on HIV-1 isolate

# 634

Accession number	DQ351235
Name	02ZAPS005MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-005M

DQ351235 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy