CESSHIV-1 database

General information on HIV-1 isolate

# 741

Accession number	DQ358800
Name	01BR047
Subtype	BF1
Country	Brazil
Sampling year	2001
Patient	BR047

DQ358800 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt gactagcgga ggctataagg agaga

Isolates with identical sequences of region:

AF538303(#1076)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy