CESSHIV-1 database

General information on HIV-1 isolate

# 743

Accession number	DQ358802
Name	01BR125
Subtype	CRF46_BF
Country	Brazil
Sampling year	2001
Patient	BR125

DQ358802 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacggcaa gaggcgagag -cggcggctgg tgagtacgcc aaa--ttttgac tagcagaggc tagaaggaga ga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy