CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 821
Accession number DQ366660
Name 05MYKL015.2
SubtypeCRF33_01B
CountryMalaysia
Sampling year 2005
PatientMYKL015

DQ366660 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gtgc acacagcaag aggcgagag-c ggcggctggt gagtacgcca at--ttttgact agcggaggct agaaggagag a

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012