CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1162
Accession number DQ366664
Name 03MYKL018.1
Subtype01B
CountryMalaysia
Sampling year 2003
PatientMYKL018

DQ366664 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggcy tgctgaggtg cacacagcaa gaggcgarag -cggcgactgg tgagtacgcc aatt-ttttga ctagcggagg ctagaaggag aga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy