CESSHIV-1 database

General information on HIV-1 isolate

# 654

Accession number	DQ369988
Name	03ZAPS054MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	054MB

DQ369988 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aaaattttat ttgactagcg gaggctagga ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy