CESSHIV-1 database

General information on HIV-1 isolate

# 657

Accession number	DQ369991
Name	05ZAPSK240B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	240B1

DQ369991 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy