CESSHIV-1 database

General information on HIV-1 isolate

# 660

Accession number	DQ369994
Name	05ZASK247B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	247B1

DQ369994 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcag gaggcgagag -cggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy