CESSHIV-1 database

General information on HIV-1 isolate

# 661

Accession number	DQ369995
Name	02ZAPS015MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	PS-015M

DQ369995 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctaggag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy