CESSHIV-1 database

General information on HIV-1 isolate

# 663

Accession number	DQ369997
Name	04ZAPS197MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	197MB

DQ369997 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aatttttagt tgactagcgg aggctaggag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy