CESSHIV-1 database

General information on HIV-1 isolate

# 699

Accession number	DQ396377
Name	03ZAPS094MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	094MB

DQ396377 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctaggag gagaga

Isolates with identical sequences of region:

AY463225(#323) AY805330(#416) DQ093586(#490) DQ351231(#630) DQ445635(#682)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy