CESSHIV-1 database

General information on HIV-1 isolate

# 706

Accession number	DQ396384
Name	03ZAPS044MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	044MB

DQ396384 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcag gaggcgagag -cggcgactgg tgagtacgcc gaaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy