CESSHIV-1 database

General information on HIV-1 isolate

# 708

Accession number	DQ396386
Name	03ZAPS112MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	112MB

DQ396386 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacttggcaa gaggcgaggg gcggcgactg gtgagtacgc caattttttt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy