CESSHIV-1 database

General information on HIV-1 isolate

# 709

Accession number	DQ396387
Name	04ZASK165B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	165B1

DQ396387 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aaatttttct tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy