CESSHIV-1 database

General information on HIV-1 isolate

# 711

Accession number	DQ396389
Name	03ZAPS067MB2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	067MB

DQ396389 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgaggg g-ggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy