CESSHIV-1 database

General information on HIV-1 isolate

# 712

Accession number	DQ396390
Name	03ZAPS125MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	125MB

DQ396390 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aaattttatt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy