CESSHIV-1 database

General information on HIV-1 isolate

# 715

Accession number	DQ396393
Name	04ZAPS169MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	169MB

DQ396393 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacttggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy