CESSHIV-1 database

General information on HIV-1 isolate

# 717

Accession number	DQ396395
Name	03ZASK104B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	104B1

DQ396395 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy