CESSHIV-1 database

General information on HIV-1 isolate

# 718

Accession number	DQ396396
Name	04ZASK193B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	193B1

DQ396396 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy