CESSHIV-1 database

General information on HIV-1 isolate

# 720

Accession number	DQ396398
Name	03ZAPS045MB2
Subtype	B
Country	South Africa
Sampling year	2003
Patient	045MB

DQ396398 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcggctg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy