CESSHIV-1 database

General information on HIV-1 isolate

# 678

Accession number	DQ445631
Name	04ZASK152MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	152MB

DQ445631 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgaga g-cggcggctg gtgagtacgc cattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy