CESSHIV-1 database

General information on HIV-1 isolate

# 838

Accession number	DQ853456
Name	15388.1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1365

DQ853456 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggtgactg gtgagtacgc cataa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

DQ853455(#837) DQ853457(#839) DQ853458(#840) DQ853462(#844) DQ853464(#846)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy