CESSHIV-1 database

General information on HIV-1 isolate

# 1437

Accession number	DQ853469
Name	14200_1
Subtype	B
Country	USA
Sampling year	1998
Patient	PIC1362

DQ853469 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cataa-ttttg actagcggag gctaggagga gaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy