CESSHIV-1 database

General information on HIV-1 isolate

# 1382

Accession number	EF121247
Name	patient_2249
Subtype	A
Country	Russia
Submitted to NCBI	2006
Patient	(patient 2249)

EF121247 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc taagattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

FJ437010(#1249) FJ437014(#1253) FJ437021(#1260) FJ437027(#1266) FJ437028(#1267) FJ503049(#1268)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy