CESSHIV-1 database

General information on HIV-1 isolate

# 1026

Accession number	EF175211
Name	WC3_0498_3
Subtype	B
Country	USA
Sampling year	1998
Patient	WC3

EF175211 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc tgaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF175209(#1024) EF175210(#1025) EF175212(#1027)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy