CESSHIV-1 database

General information on HIV-1 isolate

# 1445

Accession number	EF178303
Name	MS2004-37_005
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (9890487)

EF178303 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY857022(#1620) AY857185(#1446) EF178405(#1697) EU786678(#1191)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy