CESSHIV-1 database

General information on HIV-1 isolate

# 1609

Accession number	EF178313
Name	MS2004_37_015
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (6316813)

EF178313 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaa-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY857092(#1643)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy