CESSHIV-1 database

General information on HIV-1 isolate

# 1680

Accession number	EF178356
Name	MS2004_37_058
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (2818711)

EF178356 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcgcagcaa gaggcgaggg gcggcgactg gtgagtacgc caaat-ttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY857019(#1619) AY857028(#1626) EF178333(#1672)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy