CESSHIV-1 database

General information on HIV-1 isolate

# 1699

Accession number	EF178407
Name	MS2004_37_109
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (4400191)

EF178407 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaagg gcggcgactg gtgagtacgc caaaaaattt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy