CESSHIV-1 database

General information on HIV-1 isolate

# 1700

Accession number	EF178409
Name	MS2004_37_111
Subtype	B
Country	Australia
Sampling year	2004
Patient	- (6040974)

EF178409 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaatttttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY857086(#1641) DQ672623(#1433) U39362(#1101)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy