CESSHIV-1 database

General information on HIV-1 isolate

# 1709

Accession number	EF370189
Name	99KJS6_2886
Subtype	B
Country	South Korea
Sampling year	1999
Patient	KJS

EF370189 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaatttt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

DQ295194(#571) EF370314(#1762) EU047660(#1861) EU047662(#1863) EU047688(#1884)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy