CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1766
Accession number EF370321
Name 06CJI4_2911
SubtypeB
CountrySouth Korea
Sampling year 2006
PatientCJI

EF370321 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc aagaactttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF370319(#1764)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy