CESSHIV-1 database

General information on HIV-1 isolate

# 1767

Accession number	EF370322
Name	01PSJ10_2356
Subtype	B
Country	South Korea
Sampling year	2001
Patient	PSJ

EF370322 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaaaattt tttgactagc ggaggctaga aggagaga

Isolates with identical sequences of region:

EF370209(#1712) EF370300(#1751) EU047630(#1832)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy