CESSHIV-1 database

General information on HIV-1 isolate

# 1796

Accession number	EF370369
Name	03Lsw3_2239
Subtype	B
Country	South Korea
Sampling year	2003
Patient	Lsw

EF370369 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaaatttt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF370307(#1755) EF370308(#1756) EF370309(#1757) EF370310(#1758)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy