CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 996
Accession number EU000506
Name INDNARI-0218436 clone 1
SubtypeBC
CountryIndia
Sampling year 2002
Patient9

EU000506 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cattcggcaa gaggcgagtg g-ggcgactgg tgagtacgcc aattttattt gactagcggg ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012