CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1006
Accession number EU000516
Name INDARI-9917796 clone 2
SubtypeBC
CountryIndia
Sampling year 1999
Patient10

EU000516 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgagag -cggcgactgg cgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012