CESSHIV-1 database

General information on HIV-1 isolate

# 1600

Accession number	EU047606
Name	01CSR7_3092
Subtype	B
Country	South Korea (USA)
Sampling year	2001
Patient	HP-21(CSR)

EU047606 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaaatttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF694037(#1809) EU047609(#1812) EU047618(#1820) EU047621(#1823) GU595153(#3311)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy