CESSHIV-1 database

General information on HIV-1 isolate

# 1815

Accession number	EU047612
Name	07CSR1_3113
Subtype	B
Country	South Korea (USA)
Sampling year	2007
Patient	HP-21(CSR)

EU047612 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaattttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AY857129(#1450) EF178305(#1449) EF370180(#1454)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy