CESSHIV-1 database

General information on HIV-1 isolate

# 1833

Accession number	EU047634
Name	94HYH2_3307
Subtype	B Korean
Country	South Korea
Sampling year	1994
Patient	HYH

EU047634 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgaccg gtgagtacgc caaaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF370313(#1761) EF370360(#1779) EF370361(#1793) EU047617(#1819) EU047628(#1830) EU047644(#1842)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy