CESSHIV-1 database

General information on HIV-1 isolate

# 1846

Accession number	EU047650
Name	00HJY2_3310
Subtype	B Korean
Country	South Korea
Sampling year	2000
Patient	HJY

EU047650 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc caaaattttt tgactagcga aggctaaaag gaaaaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy