CESSHIV-1 database

General information on HIV-1 isolate

# 1044

Accession number	EU448295
Name	04FR-AUK
Subtype	CRF45_cpx
Country	France (DRC)
Sampling year	2004
Patient	AUK

EU448295 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc at---ttttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AB052610(#1066) AF361873(#1406) EU110085(#1030) FJ670519(#3173)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy