CESSHIV-1 database

General information on HIV-1 isolate

# 1051

Accession number	EU735537
Name	05BRRJ055
Subtype	CRF40_BF
Country	Brazil
Sampling year	2005

EU735537 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgcgcagca agaggcgagg ggcggcgact ggtgagtacg ccaaaaataa attttgacta gcggaggcta gaaggagaga 

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy